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When the @SIB Roadshow Initiative works out, everyone wins: optimized travel, more scientific exchange, and a chance to catch top speakers across Switzerland—this time with Prof. Piyanun Harnpicharnchai on fungal communities & water quality.
/cc @saramitri
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Really important points by Alex Bateman (@alexbateman1.bsky.social) on the importance of curation, addressing some of the myths out there.
Deeply resonates with the commentary Paul Thomas and I wrote last year https://www.nature.com/articles/s41597-024-03099-1
#ISMBECCB2025
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Fantastic keynote by @marcrr at the joint EvolCompGen-Function session of #ISMBECCB2025 on the power of (curated & FAIR) gene expression data from @bgeedb to study functional retention and innovation across animals, summarising 15+ yrs of work
Papers listed here: https://www.unil.ch/dee/en/home/menuguid/people/group-leaders/prof-marc-robinson-rechavi.html
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🔥 Top post: Job alert🚨📢! Join us as Director of the SIB Centre for Pathogen · 5 likes + reposts
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QfO 2025 review: where AI, protein structure, isoforms & domains meet orthology. We outline new methods, benchmarks and integration frameworks—with applications from environmental genomics to agriculture. Open access: http://doi.org/10.100…
Gene annotations matter: different structural gene-annotation pipelines yield markedly different orthology calls. We compare four strategies across species and argue for standards & QC before inference. Led by Silvia Prieto Banos (https://…
EdgeHOG reconstructs ancestral gene order at Tree-of-Life scale in linear time. 2,845 genomes → 1,133 ancestors; contigs for LECA (~1.8 Ga). Also dates gene adjacencies & rearrangements. Sexual chromosomes stand out! Led by Charles Bernard…
Testing the “least-diverged ortholog” conjecture at scale: using >1M structures + expression across 16 animals & 20 plants, the LDO tends to retain ancestral function while the other copy specialises. Led by Irene Julca (https://www.linked…
Structure-informed phylogenetic inference with FoldTree outperforms sequence-only trees on divergent proteins, and untangles RRNPPA quorum-sensing receptors across Gram-positive bacteria & phages. Led by David Moi (https://www.linkedin.com…
Our lab has published a couple of major papers in the past few months, which I would like to highlight in this thread!
Really important points by Alex Bateman (@alexbateman1.bsky.social) on the importance of curation, addressing some of the myths out there.
Deeply resonates with the commentary Paul Thomas and I wrote last year https://www.nature.com/artic…
Fantastic keynote by @marcrr at the joint EvolCompGen-Function session of #ISMBECCB2025 on the power of (curated & FAIR) gene expression data from @bgeedb to study functional retention and innovation across animals, summarising 15+ yrs of …
Les bailleurs de fonds de recherche n’ont pas encore réalisé que les bases de données telles que PubMed sont devenues au cœur de leurs propres enjeux—que ce soit pour réutiliser les données ou produire des connaissances—et donc qu’il serai…
When the @SIB Roadshow Initiative works out, everyone wins: optimized travel, more scientific exchange, and a chance to catch top speakers across Switzerland—this time with Prof. Piyanun Harnpicharnchai on fungal communities & water qualit…
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